This is the partial-reconfiguration feature. The exact build flow is based on the FPGA and vendor. The vendor should have the most up to date information on what features are supported and which ones are not.
Stratix® V, Arria V and Cyclone V devices offer support for partial and dynamic reconfiguration
Supports Virtex-4, Virtex-5, Virtex-6, Virtex-7, Kintex-7, Artix-7 FPGA families and the Zynq™-7000