I'm partly confused. You have been initially asking about 20 ohm impedance difference in TDR, obviosly casused by a wrong termination. Now you are looking for impedance discontinuity involved with vias. That's surely an interesting topic, but did you already solve the original problem? You still didn't show a schematic of the overall setup.
The picture in post #5 brings up questions. According to text, it's a via connection to "inner signal". How does the via look exactly? Is it blind via ending at inner signal layer? Or is it back-drilled? Or is it regular through via, not sketched correctly?