help needed in analysis of ECG Signal using MATLAB

[shaikh105]

matlab code for fetal ecg detection

Ok, easy answer! rdsamp is a Windows console application (a command-line program), so you can't simply double-click it.

One way to run it -- Open a Windows Command Prompt, change into the directory with all the downloaded files, and run the rdsamp command:
rdsamp e0801 -l 10.0 -p > e0801.txt

Another way -- Run the rdsamp command from inside MATLAB. This assumes all the downloaded files are in your MATLAB working directory:
system('rdsamp e0801 -l 10.0 -p > e0801.txt');

WOW, thats nice. well how can i jump to specific area of interest .
i mean this command '' rdsamp e0801 -l 10.0 -p > e0801.txt '' will show me 10 sec of record e0801( i think these are the first 10 sec ),,,,,, but if my interest area in this record is lying somewhere else then how could i reach to that using this command.
secondly, it seems that , from data records i get values of voltage wrt time.
but if i go to CHAT O MATIC , i found two waveform there,,,,, so can u clarify that if we take time values common,,,, but what about the voltage values,,, are these also common to both wave forms,,,,, by looking at the "signal to text" there are two values of voltages and time axis is common. so please clarify in ur code "y' reperesents which values of the voltage and they are related to which wave form.the upper or the lower.
plus i am not able to reach an14.htm,,, can u pls help.
once again i am really thankful for ur kind help.

 

[echo47]

baseline drift

To see the full link to an14.htm, scroll up to my third message.

My previous example reads only the first two columns of data (time,voltage1). It discarded the third column (voltage2).

Try this new-and-improved example.
1. The rdsamp command includes new options to jump ahead 17.3 seconds before reading the 10.0 seconds of data.
2. The textread command now reads all three columns of data (time,voltage1,voltage2), instead of just the first two.
3. The rest of the code contains a loop that processes and plots both waveforms.

You may need to widen your web browser to avoid long-line wrap:

clear;
system('rdsamp -r e0801 -f 17.3 -l 10.0 -p > e0801.txt');  % jump 17.3 seconds, read 10 seconds
[t,y(:,1),y(:,2)] = textread('e0801.txt','%f %f %f');      % read time and voltages from file
fs = 1 / (t(2) - t(1));                 % sample rate, hertz
period = 0.96;                          % cardiac period, seconds
N = length(y);
t = (0 : N-1) / fs;
for n = 1:2                             % for each voltage waveform
  subplot(4,1,n*2-1); plot(t,y(:,n)); xlim([0 max(t)]);
  title('Input Data','FontWeight','bold'); xlabel('Seconds'); ylabel('Millivolts');
  xlim1 = xlim;  ylim1 = ylim;          % remember plot limits
  %
  % Subtract baseline drift. See [url]https://www.dataq.com/applicat/articles/an14.htm[/url]
  z(:,n) = y(:,n) - smooth(y(:,n),round(fs*period));
  subplot(4,1,n*2-0); plot(t,z(:,n)); xlim([0 max(t)]);
  title('Subtract Baseline Drift','FontWeight','bold'); xlabel('Seconds'); ylabel('Millivolts');
  xlim(xlim1);
end

 

[shaikh105]

step by step analysis noise signal in matlab

To see the full link to an14.htm, scroll up to my third message.

My previous example reads only the first two columns of data (time,voltage1). It discarded the third column (voltage2).

Try this new-and-improved example.
1. The rdsamp command includes new options to jump ahead 17.3 seconds before reading the 10.0 seconds of data.
2. The textread command now reads all three columns of data (time,voltage1,voltage2), instead of just the first two.
3. The rest of the code contains a loop that processes and plots both waveforms.

You may need to widen your web browser to avoid long-line wrap:

clear;
system('rdsamp -r e0801 -f 17.3 -l 10.0 -p > e0801.txt');  % jump 17.3 seconds, read 10 seconds
[t,y(:,1),y(:,2)] = textread('e0801.txt','%f %f %f');      % read time and voltages from file
fs = 1 / (t(2) - t(1));                 % sample rate, hertz
period = 0.96;                          % cardiac period, seconds
N = length(y);
t = (0 : N-1) / fs;
for n = 1:2                             % for each voltage waveform
  subplot(4,1,n*2-1); plot(t,y(:,n)); xlim([0 max(t)]);
  title('Input Data','FontWeight','bold'); xlabel('Seconds'); ylabel('Millivolts');
  xlim1 = xlim;  ylim1 = ylim;          % remember plot limits
  %
  % Subtract baseline drift. See [url]https://www.dataq.com/applicat/articles/an14.htm[/url]
  z(:,n) = y(:,n) - smooth(y(:,n),round(fs*period));
  subplot(4,1,n*2-0); plot(t,z(:,n)); xlim([0 max(t)]);
  title('Subtract Baseline Drift','FontWeight','bold'); xlabel('Seconds'); ylabel('Millivolts');
  xlim(xlim1);
end

Dear Friend, am back again. Can u help me with some ideas using matlab,,,,,for image segmentation of the images,,,, take an example of the one pasted here in our conversation. Well, as the image noise, driftline etc are removed and the image has been converted into 1D image.. so , now i want to segment the image , for example if an abnormal patteren comes to me during 10 sec sample then i want to jump to that,, want to fully capture that area. i hope u got it.
once again waiting for ur reply.

 

[echo47]

ecg matlab fir1

Hello,
I don't understand what you mean by "segment", "jump", or "capture". Sorry.
If you need to magnify an interesting area of the plot, you can use the zoom tools on the figure toolbar.

 

[shaikh105]

fetal ecg matlab

Hello,
I don't understand what you mean by "segment", "jump", or "capture". Sorry.
If you need to magnify an interesting area of the plot, you can use the zoom tools on the figure toolbar.

Dear Echo,, we have discussed about ECG signal samples that i collected from Physionet,,, ok ,,, then u helped me in removing noise from these signals. ok
My next task is to jump to ROI ,,,,, which is an abnormal cardiac rhythum present in the sample. i think this would require image segmentation. i need ur help in accomplishing this task.
thanks

 

[shaikh105]

ecg data for matlab+download

I don't understand what you mean by "segment", "jump", or "capture".

In the attached figure,,,, i wanna jump to the abnormal spike seen at the begining of the sample and fully capture it.


ok wat i want is that ,,,,as u know i have this image in 1D format.
i mean as G=[a c g ...]
now i want to jump to this abnormal spike by scanning "G"

jump means
jump= reach at start of this spike by scanning "G" ok
segment means
segment= start of this spike ------ end of this spike. ok
Capture means
Capture= store this segment into vector ""K"" ok

 

[echo47]

how to use a .dat ecg file in matlab

You want to search the data for an abnormal cardiac cycle, and then copy that cycle's data into a new array.

I don't know how to search for an abnormal cycle. Sorry.

 

[neoaspilet11]

ecg signal plot

I think I encountered this before. You can easily remove the 60 HZ components (line frequency and also involuntary patient's movements such as when the patient is jerking while teh ECG signal is taken) by applying a bandpass filter between 0.5Hz to 25 Hz. I think i have a filter myself but i have to dig my files. ECG signal has a nominal frequency near 1 Hz. Cause the heart beats more or less one per second. Moreover the main frequency component of ECG has harmonics associated with it and can be detected upt o 3rd or fourth harmonics.

Echo is right. U need to specify your sampling frequency when you took the ecg signals or the file where you took it must have that info. otherwise you can't design a filter. It maybe possible that the downloaded data you have must have a time dimension. Then you can take the sampling frequency of your ecg signal contaminated with noise.

;-)

 

[shaikh105]

rdsamp.m

You want to search the data for an abnormal cardiac cycle, and then copy that cycle's data into a new array.

I don't know how to search for an abnormal cycle. Sorry.

Hi echo
i am back again
can u help me improving my code for the purpose of doing all this we have done during this correspondence.
my code is (as i already discussed about)
clear
[I,map]=imread('s2.png');
j=im2double(I);
level=graythresh(j); % finding threshold using 'otsu method'
k=im2bw(j,level);
[M,N]=size(k);
z=1;
xx=zeros([N,1]);
yy=zeros([N,1]);
for y= 1:N
for x= 1:M
if k(x,y)==0
xx(z)=x;
yy(z)=y;
z=z+1;
end
end
end
t=mean(xx);
ecg=-xx+t;

 

[narccizzo]

lms plot learning curve code matlab

Hello echo47,

when I run the rdsamp in the command prompt it gives me the error showed in the image



and you can see also the files that are included in the folder do you know why or what is missed?

thanks,
narccizzo.

 

[echo47]

baseline drift removal matlab

Your folder contains e0801 files but you typed e801.
Also, you are missing the header file e0801.hea.

 

[narccizzo]

how to read ecg signals in matlab

Well, I actually move the header file to the other folders after the command execution, but I am so stupid, yes the problem was the name wrong typed, thanks.

 

[amir_rastegar2003]

subtracting signal in matlab

Hi all

My question: Having the Physionet data (ECG signa), how to use MATLAB to read this file?

thanks a lot.

 

[mradz]

ecg dat covert mat

how to convert the signal in database(ecg.dat) into matlab?

 

[hayfa]

ecg signal database

I used Data base in Physionet.org
and i want convert the records to Matlab reabale format(ecg.mat)
i want to conv from a/d

can help me????????

 

[ht_patil143]

Hello Frined, Mail me for the help on ECG analysis uing matlab. Mail at ht_patil143@yahoo.com

 

[pereav]

So I currently have an excel file of ECG signals that I need to input into matlab and filter, or smooth out, but the problem is that I have only used matlab a couple of times. Is there anyway someone can help me and point me in the right direction as to what I would need to do, to do all that?

 

[vethantha]

i am vethantha (new one for this site ) need some information .how to gave input ecg wave in to matlab :?:

 

[arunadeogire]

can u help me?
when i am trying to use first program and smooth function i get following error
how can i remove it

??? Error using ==> -
Matrix dimensions must agree.

Error in ==> C:\MATLAB6p5\work\one.m
On line 12 ==> z = y - smooth(y,period);

 

[iprsachin]

Hai all,
I am sachin.Please provide me ecg data.I am a beginner.Iam not familiar with physionet.I cant open the downloaded files.