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STM32F2 Strange Timer Problem

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frankqt

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We use STM32F2 at work, I recently face with a strange problem. I do not expect a direct answer from the crowd but I hope some pointers where to look at for root cause.

I have a clock that is 1MHz in frequency, the clock works well except a shadow frequency behind. 40KHz (something between 40 to 42KHz to be exact, I couldn't pin point). It seems a clock is drifting in some direction, these timers are implemented as counters and I cannot think of a scenario why I would see something in the background.

(I noticed problem in ADC reading first, so I know it is not a scope issue)
73_1328198805.png
 

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