Friend,
yes..this is a problem faced by many while generating negative artwork layers in 274X format (600x in Allegro). Because of the problems with the IPOS and INEG commands, I guess, the negative plane layers are created as 3 separate composite layers. The best bet to overcome this problem is to generate the artwork in RS-274D format and provide the aperture files to the pcb manufacturer, along with the gerber data.Another bet is generate the artwork in ODB++ format.
Due to the advancements in the CAM technologies, CAM350 and VALOR should be able to read the composite layers i.e. the neagtive plane layers properly without any error. Hope this helps.