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Can you be more specific about the type of filer you have in mind? If you want to design Bragg gratings or thin film optical filters I recommend the transfer matrix method. If you want to design ring resonators I recommend finite-difference frequency-domain or finite-difference time-domain. Here is a link to an online FDTD course and then another link to a Computational Electromagnetics course. Between these two, all of the methods I have mentioned are covered.
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