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Just to add something,BeeBop said:Hi,
A bootloader is a small program which you program into your microcontroller, which then downloads your firmware to the microcontroller by serial port. This way you no longer need a programmer to program your microcontroller. You just use the bootloader to do this with your microcontroller in the circuit it will be used in. A bootloader can save you a lot of time.
Hope this explains it, but if you have any questions, just ask.
Best wishes,
Robert