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I agree, that the suggested differential ADC configuration can considerably reduce the problem of VREF noise. Anyway I would at least provide the minimum ADC reference bypass means suggested in the LM4050 or ADC datasheets. Wheter "gain modulation" creates a considerably noisew contribution depends on the input signal, but it's surely much lower than the previously reported noise levels.
Finally, it's not clear how the external geophone cabling looks like. Exposing the VREF node to the outer world without suffcient bypass capacitors can cause interference susceptibility as well.
Finally, it's not clear how the external geophone cabling looks like. Exposing the VREF node to the outer world without suffcient bypass capacitors can cause interference susceptibility as well.