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1 : you run simulAVR (which behave like a local server)
2 : you run gdb avr and ask it to connect to the localhost TCP server... (from here : gdb interface simulAVR)
3 : load you application and enjoy
I did this manipulation few months ago and did not perform it again (because it's just a simulation and not a debugging... so I suppose you can do the same thing with AVRStudio)
but if you have jtag ICE (or seek in this forum for JTAG ICE + AVR to build your own one), you will be able to use avr-gdb in debug-mode (via JTAG probe) instead of simulation mode...
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