The settings you have done is right., except that you need to give the input source as the pulse source supplying the up/dn clocks.
When you do it this way, you automatically get the current noise when you plot the output noise (the scale is A/sqrt(Hz))
The phase noise is output noise relative to the carrier, so obviously both will not be the same.
Here you shouldnt be looking at the phase noise., take the output noise multiply it by N/Icp to get the PFD-CP contribution to the PLL noise