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You need to check the designator value on parts in property editor.
When "Capture Hangs on Physical Netlist" it usually mean that the process spawned by it "pstswp.exe" has aborted or is hanging.
You can take a design that works for you. Netlist it out. In session log you will see the command...
Try one of the following -
1) Either get the 16.3 ISR release
2) alternatively you can check in your design if you have any long designators and shorten them
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